Pretty much every cracking tool or cracked EXE will trip anti-virus packages because they will either A. Has code to overwrite another program's bytes, which is a typical Trojan, or B. A known common program exe doesn't match the saved hash that the AV has stored for it, since a cracker has modified it.
I'll typically scan my games and tell it to ignore any EXE or single dll it registers as "bad" after doing a quick research on how the crack works. If other files begin showing up bad I might question it. But otherwise you're largely left trusting the cracker, so be very particular about where you download cracks from.