The normal complaint new Zellij users have is that it has a lot of keybindings which are likely to conflict with programs like nvim or Helix that use a lot themselves. Before, the workflow was to lock Zellij with ctrl-g which let input go through to the focused shell/program.
The new mode has most of the keybindings behind the ctrl-g lock, e.g. a new tab is ctrl-g t n (instead of ctrl-t n). You can still use alt-(cursor) for changing focus and alt-n/alt-f for a new tiled/floating pane, but all other key presses get passed along.
You can switch between default and unlock-first (non-colliding) modes so if you need those alt shortcuts you can lock everything as before.
Plus some other nice features like being able to change modifier keys while running (via the Kitty Keyboard Protocol), and autoloading the new config when you edit the file.