It kind of depends where you want to manage the filesystem and stuff there. If you want the host to also be able to use the disks, you probably want to manage that on the host. If you want the VM to handle any potential RAID, filesystems, then you likely want to pass through the whole disk.
My experience with filesystem passthrough is that it doesn't work that well. virtiofs works but it's still got rough edges, and you introduce additional host<>VM overhead to access the files, on top of the overhead of your network share.
I tend to do a bit of a hybrid approach for mines: host manages the ZFS pools, and then give a zvol or qcow2 to the VM for it to do its duties. Makes it easier to share the space across multiple VMs. But I also run NFS/Samba on the host as part of the host's responsibilities, so VMs that really needs to share data with the host filesystem use those shares.
One thing I find helpful is defining clearly what the responsibilities of the VM are: is it a file server? Is it a general storage server? If it's only a file server then I'd manage the disks on the host and give the VM the final volume(s) to manage the shares on. If it's a storage server that needs to manage the disks (could be a TrueNAS or unRAID VM, for example), then I'd pass the disks in as virtio-blk/virtio-scsi and let the VM manage that stuff.