Most of these are VPN technologies of one sort or another. These sit on top of layers 3 or 4 and encapsulate IP packets.
In other words, each packet sent to your internet provider has two sets of IP addresses. The outer set is to communicate between your computer and the VPN termination point. The second, inner set is between your computer and the service you are ultimately using.
Web traffic almost always uses HTTPS for transport, Usenet NNTP.
OSI layers 5 and 6 are not relevant in modern IP networks. If they are needed, they are provided in the application layer.